First 3D structure from a key influenza protein sheds light on transmission of flu between birds and humans

The term Spanish Flu seems almost innocuous to those who are unaware of its history. Spanish Flu swept the world in the years after World War One, killing somewhere between 2.5 and 5% of the human population of Planet earth. Around 20% of the world population suffered from the disease which killed more people than had WW1 and more than the Black Death of the 1300s – it remains the most deadly outbreak of disease in world history. Spanish Flu was caused by a mutation of the bird-specific H1N1 strain of the influenza virus. More recently, another highly infectious avian strain (H5N1 also known as Bird Flu ) has caused great concern that it might also mutate to allow human-to-human transmission and cause another catastrophic pandemic. Specific mutations in a viral protein, the polymerase, contribute to the ability of the bird virus to jump the species barrier to humans. European researchers have now produced the first three-dimensional image of part of this key protein. The study, which is published in the current issue of Nature Structural and Molecular Biology, investigates the structure and function of the protein and sheds light on how polymerase mutations contribute to transmission of avian flu to humans.

Upon infection the influenza virus starts multiplying in the cells of an infected host. The polymerase is crucial in this process because it copies the viral genome and directs the production of its proteins. Interfering with polymerase function would prevent the virus replicating, thereby reducing the spread of the virus and the severity of the infection.

“For many years scientists have tried to understand the flu polymerase and to look for weak points that could be targeted by drugs,” says Darren Hart, whose team participated in the research at EMBL Grenoble. “But no one could get enough protein to analyse its structure. We developed a way to use robots to screen tens of thousands of experimental conditions and discovered a piece of the influenza polymerase that we could work with. It is a small part of the entire protein, but it provides interesting insights into how the protein works and how mutations may affect host range.”

Together with scientists at the IBS they visualized the atomic structure of the protein and discovered a previously overlooked signal that labels it for transport to the human nucleus where the genetic material of the virus is replicated. Cell microscopy studies at EMBL Heidelberg revealed that the human nuclear transport protein, importin alpha, recognises this signal and shuttles the polymerase into the nucleus.

To find out how the polymerase and importin interact, Stephen Cusack, head of EMBL Grenoble, and collaborators at the UVHCI, used the high intensity X-ray source of the European Synchrotron Radiation Facility to generate a high-resolution image of the two proteins interacting with each other. The image revealed that mutations known to play a role in the transmission of avian influenza virus to mammals were located within, or close to, this site of interaction. This suggests that mutations may affect the efficiency of nuclear transport and through this the ability of the virus to replicate in different species.

“Interfering with polymerase function could provide new ways to treat or prevent flu,” says Cusack, “but this will require a detailed picture of the rest of the polymerase. This is what we are aiming for in our new FLUPOL project. In a joint effort with other European laboratories, and with financial support by the European Commission, we will explore both structure and function of this key drug target and try to characterise other mutations implicated in bird-to-human transmission.”

The researchers involved in the project are from the European Molecular Biology Laboratory (EMBL) in Grenoble and Heidelberg, the Institut de Biologie Structurale (IBS) and the Unit of Virus Host Cell Interactions (UVHCI), both in Grenoble.